We're a Baker Tilly network member
About Baker Tilly
Back to top
Implementing payroll at scale: a step-by-step playbook
Article

Implementing payroll at scale: a step-by-step playbook

Key points

  • A large-scale payroll system implementation is a strategic transformation, not just a tech upgrade. 
  • Increasing focus on wage compliance raise the stakes.  
  • Success depends on strong planning, clean data, rigorous testing, and cross-functional collaboration. 
  • Treating payroll as a business system, not just HR software, is key to achieving long-term value. 

For organisations with large and complex workforces, implementing a new payroll or workforce management system is one of the most high-stakes transformations you will undertake – all while business continues as usual. Even more so when an accidental breach of the Fair Work Act could be deemed sufficient for civil enforcements. 

Having a clear playbook can help you navigate each critical stage of the process, from early planning to post-go-live support. It sets out the steps that matter, the risks to avoid, and the strategies that help ensure your new system does more than just go live.  

Why getting payroll right matters more than ever

Getting payroll wrong has become even more serious in Australia following recent changes to the Fair Work Act. Poor implementation now carries both legal and reputational risk. From 1 January 2025, new wage theft laws came into effect, enforcing criminal charges if employers are found to be intentionally underpaying wages or entitlements, including superannuation, allowances, and leave. That’s why it’s more important than ever for payroll systems to be accurate, traceable, and in line with current award rules. 

It starts long before the software

A common mistake large employers make is treating payroll implementation as a software upgrade rather than a business transformation. 

The most successful projects start with a payroll readiness assessment. This is a structured assessment of your current systems, data quality, and compliance risks. This early step helps avoid the costly mistake of lifting flawed processes or inconsistent records into a new environment. 

A readiness assessment can also surface hidden risks, such as unclear payroll ownership, complex award interpretations or misaligned feeder systems. Defining the true scope of the project upfront is important. It helps set realistic expectations for timing, resourcing, and budget, and reduces surprises later in the process. 

Knowing your standard

The larger the workforce, the larger the complexity. Most off-the-shelf payroll platforms are built to handle standard conditions. But large Australian employers rarely operate under a single set of rules. Instead, they often deal with a mix of awards and enterprise agreements, multi-employment, pay types and location-specific rules that make things more complicated. 

Each of these adds a layer of risk if not solutioned correctly. Without taking the time to map how your payroll actually functions, even the best systems can fall short. 

The importance of a business-led team

Payroll implementations are not IT projects. While IT plays a vital role, the real drivers of success are the business teams who understand how people are paid and why. 

A team for this implementation should include people from HR, Finance, Legal, Operations and IT – all working together under a clear governance structure. It’s also important to appoint a business owner early: someone who can lead decision making , resolve issues and keep things on track from start to finish. 

We have seen large employers push payroll changes through with limited resources or unclear responsibilities. This often leads to miscommunication, configuration issues and delays when problems arise. 

This is not a project that can be managed using BAU resources. It demands dedicated time, clear roles and attention from experienced stakeholders. 

Data is make or break 

Even the best-designed payroll system will deliver poor results if the data going in is flawed. 

Clean, accurate data is essential for compliant pay runs and smooth system performance. This includes core details like employee start dates, classifications, tax settings and accrued entitlements. 

In organisations with large workforces, payroll data often comes from legacy systems, spreadsheets and separate HR files. Cleaning and reconciling this data can be a time-consuming but important task. Modern tools can help by identifying duplicates, spotting anomalies, and validating data against set rules. But assessing historical records and resolving inconsistencies still requires specialist analysis. 

It’s worth checking this off early, as it can help avoid incorrect pay and compliance issues like wage underpayment. 

Testing is the real test

Many implementation teams treat testing as a checkbox exercise, rather than giving it the same priority as other critical tasks. But testing should be considered essential – standard tests often don’t capture the variety of real-world scenarios that occur across a large and diverse workforce. 

It’s worth calling this out clearly in your implementation playbook. A thorough testing process should include scenario-based testing, parallel pay runs to compare current and new outputs, and end to end user acceptance testing by payroll and HR teams who will use the system every day. 

We’ve seen cases where incorrect overtime or penalty rate settings were only picked up after go-live, issues that could have been avoided with more robust testing. 

Testing is also a chance to check how the system works for employees. From how payslips are displayed to how managers approve leave or maintain rosters, these details shape the day-to-day experience and overall adoption.  

Change management: essential, not optional

Payroll is personal and in organisations with large workforces, the stakes are even higher. The more people you employ, the more important it is to maintain trust and confidence in how and when they get paid.  

That’s why clear communication, hands-on training and strong post-go-live support are critical. Employees need to understand what’s changing, why it matters, and where to go for help. A structured change management plan is just as important as selecting the right system.  

The bottom line

Successful payroll implementation keeps evolving. The systems that continue to deliver value are those treated as part of the business, not a set-and-forget solution. 

Implementing a large-scale payroll system carries real risk if not planned well. Getting it right from the very first step is essential to any successful playbook. 


This content is general commentary only and does not constitute advice. Before making any decision or taking any action in relation to the content, you should consult your professional advisor. To the maximum extent permitted by law, neither Pitcher Partners or its affiliated entities, nor any of our employees will be liable for any loss, damage, liability or claim whatsoever suffered or incurred arising directly or indirectly out of the use or reliance on the material contained in this content. Pitcher Partners is an association of independent firms. Pitcher Partners is a member of the global network of Baker Tilly International Limited, the members of which are separate and independent legal entities. Liability limited by a scheme approved under professional standards legislation.

Pitcher Partners insights

Get the latest Pitcher Partners updates direct to your inbox

Thank you for you interest

How can we help you?

Business or personal advice
General information
Career information
Media enquiries
Contact expert
Become a member
Specialist query
Please provide as much detail to ensure appropriate allocation of your query
Please highlight a realistic time frame that will enable us to provide advice within a suitable and timely manner. Please note given conflicting demands with our senior personnel, we will endeavour to respond to you within the nominated time frame. If you require an urgent response, please contact us on 03 8610 5477.
Responses to queries submitted via this form (“Response”) are produced by Pitcher Partners Advisors Proprietary Limited and are prepared for the exclusive use and benefit of those who are invited, and agree, to participate in the CRITICAL POINT NETWORK service. Responses provided, or any part thereof, must not be distributed, copied, used, or relied on by any other person, without our prior written consent. Any information provided is intended to be of a general nature and prepared without taking into account your objectives, circumstances, financial situation or particular needs. Any information provided does not constitute personal advice. If you act on anything contained in a Response without seeking personal advice you do so at your own risk. In providing this information, we are not purporting to act as solicitors or provide legal advice. Any information provided by us is prepared in the ordinary course of our profession and is based on the relevant law and its interpretations by relevant authorities as it stands at the time the information is provided. Any changes or modifications to the law and/or its interpretation after this time could affect the information we provide. It is not possible to guarantee that the tax authorities will not challenge a transaction or to guarantee the outcome of such a challenge if one is raised on the basis of the information we provide. To the maximum extent permitted by law, Pitcher Partners will not be liable for any loss, damage, liability or claim whatsoever suffered or incurred by any person arising directly or indirectly out of the use or reliance on the information contained within a Response. We recommend you seek a formal engagement of our professional services to consider the appropriateness of the information in a Response having regard to your objectives, circumstances, financial situation or needs before proceeding with any financial decisions. Pitcher Partners is an association of independent firms. Pitcher Partners is a member of the global network of Baker Tilly International Limited, the members of which are separate and independent legal entities. Liability limited by a scheme approved under professional standards legislation.
CPN Enquiry
Business Radar 2025
Dealmakers 2025
Not-for-profit survey 2025
Search by industry